diff --git a/src-tauri/src/utils/init.rs b/src-tauri/src/utils/init.rs
index 61ee164a9..0dda26a8d 100644
--- a/src-tauri/src/utils/init.rs
+++ b/src-tauri/src/utils/init.rs
@@ -490,17 +490,24 @@ pub fn init_scheme() -> Result<()> {
 }
 #[cfg(target_os = "linux")]
 pub fn init_scheme() -> Result<()> {
-    let output = std::process::Command::new("xdg-mime")
-        .arg("default")
-        .arg("clash-verge.desktop")
-        .arg("x-scheme-handler/clash")
-        .output()?;
-    if !output.status.success() {
-        return Err(anyhow::anyhow!(
-            "failed to set clash scheme, {}",
-            String::from_utf8_lossy(&output.stderr)
-        ));
+    const DESKTOP_FILE: &str = "clash-verge.desktop";
+
+    for scheme in DEEP_LINK_SCHEMES {
+        let handler = format!("x-scheme-handler/{scheme}");
+        let output = std::process::Command::new("xdg-mime")
+            .arg("default")
+            .arg(DESKTOP_FILE)
+            .arg(&handler)
+            .output()?;
+        if !output.status.success() {
+            return Err(anyhow::anyhow!(
+                "failed to set {handler}, {}",
+                String::from_utf8_lossy(&output.stderr)
+            ));
+        }
     }
+
+    crate::utils::linux::ensure_mimeapps_entries(DESKTOP_FILE, DEEP_LINK_SCHEMES)?;
     Ok(())
 }
 #[cfg(target_os = "macos")]
@@ -508,6 +515,9 @@ pub fn init_scheme() -> Result<()> {
     Ok(())
 }
 
+#[cfg(target_os = "linux")]
+const DEEP_LINK_SCHEMES: &[&str] = &["clash", "clash-verge"];
+
 pub async fn startup_script() -> Result<()> {
     let app_handle = handle::Handle::app_handle();
     let script_path = {
diff --git a/src-tauri/src/utils/linux.rs b/src-tauri/src/utils/linux.rs
index 2094811b3..678008597 100644
--- a/src-tauri/src/utils/linux.rs
+++ b/src-tauri/src/utils/linux.rs
@@ -1,5 +1,6 @@
 use crate::logging;
 use crate::utils::logging::Type;
+use anyhow::Result;
 use std::collections::HashSet;
 use std::env;
 use std::fs;
@@ -472,6 +473,233 @@ fn extract_nvidia_driver_version(summary: &str) -> Option<&str> {
         .find(|token| token.chars().all(|c| c.is_ascii_digit() || c == '.'))
 }
 
+pub fn ensure_mimeapps_entries(desktop_file: &str, schemes: &[&str]) -> Result<()> {
+    let Some(path) = mimeapps_list_path() else {
+        return Ok(());
+    };
+
+    if !path.exists() {
+        return Ok(());
+    }
+
+    let original = fs::read_to_string(&path)?;
+    let mut changed = false;
+
+    let mut output_lines: Vec<String> = Vec::new();
+    let mut current_section: Option<SectionKind> = None;
+    let mut section_buffer: Vec<String> = Vec::new();
+    let mut default_present = false;
+
+    for line in original.lines() {
+        let trimmed = line.trim();
+        if trimmed.starts_with('[') {
+            if let Some(kind) = current_section.take() {
+                flush_section(
+                    &mut output_lines,
+                    &mut section_buffer,
+                    desktop_file,
+                    schemes,
+                    kind,
+                    &mut changed,
+                );
+            }
+
+            if trimmed.eq_ignore_ascii_case("[Default Applications]") {
+                default_present = true;
+                current_section = Some(SectionKind::DefaultApplications);
+                output_lines.push("[Default Applications]".to_string());
+                continue;
+            } else if trimmed.eq_ignore_ascii_case("[Added Associations]") {
+                current_section = Some(SectionKind::AddedAssociations);
+                output_lines.push("[Added Associations]".to_string());
+                continue;
+            }
+        }
+
+        if current_section.is_some() {
+            section_buffer.push(line.to_string());
+        } else {
+            output_lines.push(line.to_string());
+        }
+    }
+
+    if let Some(kind) = current_section.take() {
+        flush_section(
+            &mut output_lines,
+            &mut section_buffer,
+            desktop_file,
+            schemes,
+            kind,
+            &mut changed,
+        );
+    }
+
+    if !default_present {
+        changed = true;
+        if !output_lines.is_empty() && !output_lines.last().unwrap().is_empty() {
+            output_lines.push(String::new());
+        }
+        output_lines.push("[Default Applications]".to_string());
+        for &scheme in schemes {
+            output_lines.push(format!("x-scheme-handler/{scheme}={desktop_file};"));
+        }
+    }
+
+    if !changed {
+        return Ok(());
+    }
+
+    let mut new_content = output_lines.join("\n");
+    if !new_content.ends_with('\n') {
+        new_content.push('\n');
+    }
+
+    fs::write(path, new_content)?;
+    Ok(())
+}
+
+fn mimeapps_list_path() -> Option<PathBuf> {
+    let data_path = env::var_os("XDG_DATA_HOME")
+        .map(PathBuf::from)
+        .or_else(|| {
+            env::var_os("HOME").map(PathBuf::from).map(|mut home| {
+                home.push(".local");
+                home.push("share");
+                home
+            })
+        })
+        .map(|mut dir| {
+            dir.push("applications");
+            dir.push("mimeapps.list");
+            dir
+        });
+
+    if let Some(ref path) = data_path {
+        if path.exists() {
+            return Some(path.clone());
+        }
+    }
+
+    let config_path = env::var_os("XDG_CONFIG_HOME")
+        .map(PathBuf::from)
+        .or_else(|| {
+            env::var_os("HOME").map(PathBuf::from).map(|mut home| {
+                home.push(".config");
+                home
+            })
+        })
+        .map(|mut dir| {
+            dir.push("mimeapps.list");
+            dir
+        });
+
+    if let Some(ref path) = config_path {
+        if path.exists() {
+            return Some(path.clone());
+        }
+    }
+
+    config_path
+}
+
+#[derive(Clone, Copy)]
+enum SectionKind {
+    DefaultApplications,
+    AddedAssociations,
+}
+
+fn flush_section(
+    output: &mut Vec<String>,
+    section: &mut Vec<String>,
+    desktop_file: &str,
+    schemes: &[&str],
+    kind: SectionKind,
+    changed: &mut bool,
+) {
+    let mut seen: HashSet<&str> = HashSet::new();
+    let mut processed: Vec<String> = Vec::with_capacity(section.len());
+
+    for line in section.drain(..) {
+        let trimmed = line.trim();
+        if trimmed.is_empty() || trimmed.starts_with('#') {
+            processed.push(line);
+            continue;
+        }
+
+        let Some((raw_key, raw_value)) = trimmed.split_once('=') else {
+            processed.push(line);
+            continue;
+        };
+
+        if let Some(scheme) = match_scheme(raw_key.trim(), schemes) {
+            if !seen.insert(scheme) {
+                *changed = true;
+                continue;
+            }
+
+            let prefix = line
+                .chars()
+                .take_while(|c| c.is_whitespace())
+                .collect::<String>();
+            let mut values: Vec<String> = raw_value
+                .split(';')
+                .filter_map(|value| {
+                    let trimmed = value.trim();
+                    (!trimmed.is_empty()).then(|| trimmed.to_string())
+                })
+                .collect();
+
+            if let Some(pos) = values.iter().position(|value| value == desktop_file) {
+                if pos != 0 {
+                    values.remove(pos);
+                    values.insert(0, desktop_file.to_string());
+                    *changed = true;
+                }
+            } else {
+                values.insert(0, desktop_file.to_string());
+                *changed = true;
+            }
+
+            let mut new_line = format!("{prefix}x-scheme-handler/{scheme}=");
+            new_line.push_str(&values.join(";"));
+            new_line.push(';');
+
+            if new_line != line {
+                *changed = true;
+            }
+
+            processed.push(new_line);
+            continue;
+        }
+
+        processed.push(line);
+    }
+
+    let ensure_all = matches!(
+        kind,
+        SectionKind::DefaultApplications | SectionKind::AddedAssociations
+    );
+
+    if ensure_all {
+        for &scheme in schemes {
+            if !seen.contains(scheme) {
+                processed.push(format!("x-scheme-handler/{scheme}={desktop_file};"));
+                *changed = true;
+            }
+        }
+    }
+
+    output.extend(processed);
+}
+
+fn match_scheme<'a>(key: &str, schemes: &'a [&str]) -> Option<&'a str> {
+    if let Some(rest) = key.strip_prefix("x-scheme-handler/") {
+        return schemes.iter().copied().find(|candidate| *candidate == rest);
+    }
+
+    schemes.iter().copied().find(|candidate| *candidate == key)
+}
+
 pub fn configure_environment() {
     let session = SessionEnv::gather();
     let overrides = DmabufOverrides::gather();